2O2D	Isomerase	date	Nov 29, 2006
title	Crystal Structure Of Phosphoglucose Isomerase From Trypanoso Complexed With Citrate
authors	D.Arsenieva, G.H.Mazock, B.L.Appavu, C.J.Jeffery
compound		source
Molecule: Glucose-6-Phosphate Isomerase, Glycosomal Chain: A, B, C Synonym: Gpi; Phosphoglucose Isomerase; Pgi; Phosphohexose Phi; Ec: 5.3.1.9 Engineered: Yes		Organism_scientific: Trypanosoma Brucei Brucei Organism_taxid: 5702 Strain: 9274 Gutat10.1 Gene: Pgi Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgemex-1 Other_details: Gene Placed Directly Under T7 Promoter
symmetry	Space Group: C 2 2 21	R_factor 0.213 R_Free 0.236
crystal cell	length a length b length c angle alpha angle beta angle gamma 124.203 217.391 126.433 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	CIT, GOL	enzyme	Isomerase E.C.5.3.1.9 BRENDA
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Crystal structure of phosphoglucose isomerase from Trypanosoma brucei complexed with glucose-6-phosphate at 1.6 A resolution., Arsenieva D, Appavu BL, Mazock GH, Jeffery CJ, Proteins. 2008 Jun 16. PMID:18561188

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (292 Kb) [Save to disk] Biological Unit Coordinates (2o2d.pdb1.gz) 194 Kb Biological Unit Coordinates (2o2d.pdb2.gz) 191 Kb LPC: Ligand-Protein Contacts for 2O2D CSU: Contacts of Structural Units for 2O2D Likely Quarternary Molecular Structure file(s) for 2O2D Structure Factors (1155 Kb) Retrieve 2O2D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2O2D from S2C, [Save to disk] Re-refined 2o2d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2O2D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2O2D

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2O2D, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2o2d_A] [2o2d_B] [2o2d_C] [2o2d] SWISS-PROT database: [P13377] Domain organization of [G6PI_TRYBB] by SWISSPFAM

Other resources with information on 2O2D

Community annotation for 2O2D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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