2O35 Structural Genomics, Unknown Function date Nov 30, 2006
title Protein Of Unknown Function (Duf1244) From Sinorhizobium Mel
authors Y.Kim, A.Joachimiak, E.Evdokimova, M.Kudritska, A.Edwards, A.Savc Midwest Center For Structural Genomics (Mcsg)
compound source
Molecule: Hypothetical Protein Duf1244
Chain: A, B
Engineered: Yes
 Organism_scientific: Sinorhizobium Meliloti
Organism_taxid: 382
Strain: 1021
Gene: R02792, Smc04008
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Modified Pet Vector
symmetry Space Group: P 31 2 1
R_factor 0.209 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.994 80.994 64.708 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.12 Å
ligand MG, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (2o35.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 2O35
  • CSU: Contacts of Structural Units for 2O35
  • Likely Quarternary Molecular Structure file(s) for 2O35
  • Structure Factors (248 Kb)
  • Retrieve 2O35 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O35 from S2C, [Save to disk]
  • Re-refined 2o35 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2O35 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2O35
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2O35, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o35_B] [2o35] [2o35_A]
  • SWISS-PROT database: [Q92M60]
  • Domain organization of [Q92M60_RHIME] by SWISSPFAM
    • Other resources with information on 2O35
  • Community annotation for 2O35 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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