2O39	Viral Protein Immune System	date	Dec 01, 2006
title	Human Adenovirus Type 11 Knob In Complex With Domains Scr1 A Cd46 (Membrane Cofactor Protein, Mcp)
authors	D.B.Persson, D.M.Reiter, N.Arnberg, T.Stehle
compound		source
Molecule: Fiber Protein Chain: A, B Fragment: Residues 129-325 Synonym: Piv Engineered: Yes		Organism_scientific: Human Adenovirus 11p Organism_taxid: 343462 Strain: Slobiski Gene: Piv Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta 2 De3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: Membrane Cofactor Protein Chain: C, D Fragment: Scr1 And Scr 2 Domains Synonym: Trophoblast Leukocyte Common Antigen, Tlx, Cd46 An Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cd46, Mcp Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_cell_line: Cho-Lec3281 Expression_system_cell: Cho Cell Expression_system_vector_type: Plasmid Expression_system_plasmid: Pbj5
symmetry	Space Group: P 3	R_factor 0.238 R_Free 0.273
crystal cell	length a length b length c angle alpha angle beta angle gamma 106.140 106.140 68.320 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.85 Å
ligand	BMA, CA, NAG	enzyme
note	2O39 (Molecule of the Month:pdb132)is a representative structure
Gene Ontology	Chain Function Process Component A, B
Primary reference	Adenovirus type 11 binding alters the conformation of its receptor CD46., Persson BD, Reiter DM, Marttila M, Mei YF, Casasnovas JM, Arnberg N, Stehle T, Nat Struct Mol Biol. 2007 Feb;14(2):164-6. Epub 2007 Jan 14. PMID:17220899

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk] Biological Unit Coordinates (2o39.pdb1.gz) 157 Kb Biological Unit Coordinates (2o39.pdb2.gz) 156 Kb LPC: Ligand-Protein Contacts for 2O39 CSU: Contacts of Structural Units for 2O39 Likely Quarternary Molecular Structure file(s) for 2O39 Structure Factors (221 Kb) Retrieve 2O39 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2O39 from S2C, [Save to disk] Re-refined 2o39 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2O39 in 3D

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Visual 3D analysis of 2O39

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2O39, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2o39_B] [2o39_A] [2o39] [2o39_C] [2o39_D] SWISS-PROT database: [P35774] [P15529] Domain organization of [FIBP_ADE1P] [MCP_HUMAN] by SWISSPFAM Domain found in 2O39: [CCP ] by SMART

Other resources with information on 2O39

Community annotation for 2O39 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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