2O55 Structural Genomics, Unknown Function date Dec 05, 2006
title Crystal Structure Of A Putative Glycerophosphodiester Phosphodiesterase From Galdieria Sulphuraria
authors J.G.Mccoy, G.E.Wesenberg, G.N.Phillips Jr., E.Bitto, C.A.Bingman For Eukaryotic Structural Genomics (Cesg)
compound source
Molecule: Putative Glycerophosphodiester Phosphodiesterase
Chain: A
Engineered: Yes
 Organism_scientific: Galdieria Sulphuraria
Organism_taxid: 130081
Gene: C454_101305g29.T1 (Msu_galdi)
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834 P(Rare2)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pvp 16
symmetry Space Group: P 31 2 1
R_factor 0.192 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.427 102.427 51.709 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.81 Å
ligand MSE, SO4 enzyme
note 2O55 is a representative structure
Gene C454
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (2o55.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 2O55
  • CSU: Contacts of Structural Units for 2O55
  • Likely Quarternary Molecular Structure file(s) for 2O55
  • Structure Factors (278 Kb)
  • Retrieve 2O55 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O55 from S2C, [Save to disk]
  • Re-refined 2o55 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2O55 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2O55
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2O55, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o55_A] [2o55]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2O55
  • Community annotation for 2O55 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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