2O71	Apoptosis	date	Dec 09, 2006
title	Crystal Structure Of Raidd Dd
authors	H.Wu, H.Park
compound		source
Molecule: Death Domain-Containing Protein Cradd Chain: A Fragment: Death Domain, Residues 95-199 Synonym: Caspase And Rip Adapter With Death Domain, Rip-Ass Protein With A Death Domain; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cradd, Raidd Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet 26b
symmetry	Space Group: P 31 2 1	R_factor 0.231 R_Free 0.241
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.058 56.058 64.915 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.00 Å
note	2O71 is a representative structure
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of RAIDD death domain implicates potential mechanism of PIDDosome assembly., Park HH, Wu H, J Mol Biol. 2006 Mar 24;357(2):358-64. Epub 2006 Jan 11. PMID:16434054

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (18 Kb) [Save to disk] Biological Unit Coordinates (2o71.pdb1.gz) 14 Kb CSU: Contacts of Structural Units for 2O71 Likely Quarternary Molecular Structure file(s) for 2O71 Structure Factors (123 Kb) Retrieve 2O71 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2O71 from S2C, [Save to disk] Re-refined 2o71 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2O71 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2O71

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2O71, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2o71_A] [2o71] SWISS-PROT database: [P78560] Domain organization of [CRADD_HUMAN] by SWISSPFAM Domain found in 2O71: [DEATH ] by SMART

Other resources with information on 2O71

Community annotation for 2O71 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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