2O9K	Gene Regulation	date	Dec 13, 2006
title	Wdr5 In Complex With Dimethylated H3k4 Peptide
authors	J.R.Min, A.Schuetz, A.Allali-Hassani, F.Martin, P.Loppnau, M.Veda J.Weigelt, M.Sundstrom, A.M.Edwards, C.H.Arrowsmith, A.Bochkare A.N.Plotnikov, Structural Genomics Consortium (Sgc)
compound		source
Molecule: Wd Repeat Protein 5 Chain: A, C Synonym: Bmp2-Induced 3-Kb Gene Protein Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Wdr5, Big3 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: H3 Histone Chain: B, D Engineered: Yes		Synthetic: Yes Other_details: The Peptide Was Chemically Synthesized. The Of The Peptide Is Naturally Found In Xenopus Tropicalis (We Clawed Frog).
symmetry	Space Group: C 1 2 1	R_factor 0.174 R_Free 0.226
crystal cell	length a length b length c angle alpha angle beta angle gamma 134.045 46.975 112.236 90.00 117.26 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	MLY	enzyme
note	2O9K supersedes 2H9O
Gene Ontology	Chain Function Process Component A, C
Primary reference	Structural basis for molecular recognition and presentation of histone H3 By WDR5., Schuetz A, Allali-Hassani A, Martin F, Loppnau P, Vedadi M, Bochkarev A, Plotnikov AN, Arrowsmith CH, Min J, EMBO J. 2006 Aug 31;. PMID:16946699

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk] Biological Unit Coordinates (2o9k.pdb1.gz) 54 Kb Biological Unit Coordinates (2o9k.pdb2.gz) 54 Kb LPC: Ligand-Protein Contacts for 2O9K CSU: Contacts of Structural Units for 2O9K Likely Quarternary Molecular Structure file(s) for 2O9K Structure Factors (740 Kb) Retrieve 2O9K in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2O9K from S2C, [Save to disk] Re-refined 2o9k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2O9K in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2O9K

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2O9K, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2o9k_C] [2o9k] [2o9k_A] [2o9k_B] [2o9k_D] SWISS-PROT database: [P61964] Domain organization of [WDR5_HUMAN] by SWISSPFAM Domain found in 2O9K: [WD40 ] by SMART

Other resources with information on 2O9K

Community annotation for 2O9K at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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