2OBE Viral Protein date Dec 18, 2006
title Crystal Structure Of Chimpanzee Adenovirus (Type 68simian 2 Coat Protein Hexon
authors F.Xue, J.J.Rux, R.M.Burnett
compound source
Molecule: Hexon Protein
Chain: A, B, C
Synonym: Cp-H,Protein II
 Organism_scientific: Simian Adenovirus 25
Organism_taxid: 175567
symmetry Space Group: C 2 2 2
R_factor 0.169 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.800 433.000 159.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 2HP, MPD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructure-based identification of a major neutralizing site in an adenovirus hexon., Pichla-Gollon SL, Drinker M, Zhou X, Xue F, Rux JJ, Gao GP, Wilson JM, Ertl HC, Burnett RM, Bergelson JM, J Virol. 2007 Feb;81(4):1680-9. Epub 2006 Nov 15. PMID:17108028
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (466 Kb) [Save to disk]
  • Biological Unit Coordinates (2obe.pdb1.gz) 455 Kb
  • LPC: Ligand-Protein Contacts for 2OBE
  • CSU: Contacts of Structural Units for 2OBE
  • Likely Quarternary Molecular Structure file(s) for 2OBE
  • Structure Factors (1481 Kb)
  • Retrieve 2OBE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OBE from S2C, [Save to disk]
  • Re-refined 2obe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2OBE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2OBE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OBE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2obe_B] [2obe] [2obe_C] [2obe_A]
  • SWISS-PROT database: [Q8UY79]
  • Domain organization of [Q8UY79_9ADEN] by SWISSPFAM
    • Other resources with information on 2OBE
  • Community annotation for 2OBE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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