2OCP Transferase date Dec 21, 2006
title Crystal Structure Of Human Deoxyguanosine Kinase
authors K.Johansson, S.Ramaswamy, C.Ljungkrantz, W.Knecht, J.Piskur, B.Mu Petersen, S.Eriksson, H.Eklund
compound source
Molecule: Deoxyguanosine Kinase
Chain: A, B, C, D, E, F, G, H
Synonym: Dgk
Ec: 2.7.1.113
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dguok, Dgk
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.265 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.180 120.030 154.350 90.00 90.68 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand DTP enzyme Transferase E.C.2.7.1.113 BRENDA
note 2OCP supersedes 1JAG
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceStructural basis for substrate specificities of cellular deoxyribonucleoside kinases., Johansson K, Ramaswamy S, Ljungcrantz C, Knecht W, Piskur J, Munch-Petersen B, Eriksson S, Eklund H, Nat Struct Biol 2001 Jul;8(7):616-20. PMID:11427893
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (321 Kb) [Save to disk]
  • Biological Unit Coordinates (2ocp.pdb1.gz) 82 Kb
  • Biological Unit Coordinates (2ocp.pdb2.gz) 82 Kb
  • Biological Unit Coordinates (2ocp.pdb3.gz) 81 Kb
  • Biological Unit Coordinates (2ocp.pdb4.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 2OCP
  • CSU: Contacts of Structural Units for 2OCP
  • Likely Quarternary Molecular Structure file(s) for 2OCP
  • Structure Factors (557 Kb)
  • Retrieve 2OCP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OCP from S2C, [Save to disk]
  • Re-refined 2ocp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OCP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OCP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OCP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ocp_A] [2ocp] [2ocp_C] [2ocp_D] [2ocp_G] [2ocp_E] [2ocp_B] [2ocp_H] [2ocp_F]
  • SWISS-PROT database: [Q16854]
  • Domain organization of [DGUOK_HUMAN] by SWISSPFAM
  • Other resources with information on 2OCP
  • Community annotation for 2OCP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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