2OD1 Metal Binding Protein date Dec 21, 2006
title Solution Structure Of The Mynd Domain From Human Aml1-Eto
authors Y.Z.Liu, W.Chen, J.Gaudet, M.D.Cheney, L.Roudaia, T.Cierpicki, R.C.Klet, K.Hartman, T.M.Laue, N.A.Speck, J.H.Bushweller
compound source
Molecule: Protein Cbfa2t1
Chain: A
Fragment: Mynd Domain
Synonym: Protein Mtg8, Protein Eto, Eight Twenty One Protein, Cyclin-D-Related Protein, Zinc Finger Mynd Domain- Containing Protein 2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aml1-Eto
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl-21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t3
methodSolution NMR
ligand ZN enzyme

Primary referenceStructural basis for recognition of SMRT/N-CoR by the MYND domain and its contribution to AML1/ETO's activity., Liu Y, Chen W, Gaudet J, Cheney MD, Roudaia L, Cierpicki T, Klet RC, Hartman K, Laue TM, Speck NA, Bushweller JH, Cancer Cell. 2007 Jun;11(6):483-97. PMID:17560331
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (384 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2OD1
  • CSU: Contacts of Structural Units for 2OD1
  • Original NMR restraints for 2OD1 from PDB
  • Retrieve 2OD1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OD1 from S2C, [Save to disk]
  • View 2OD1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OD1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2OD1, from MSDmotif at EBI
  • Fold representative 2od1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2od1] [2od1_A]
  • SWISS-PROT database: [Q06455]
  • Domain organization of [MTG8_HUMAN] by SWISSPFAM
  • Other resources with information on 2OD1
  • Community annotation for 2OD1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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