2OF5	Apoptosis	date	Jan 02, 2007
title	Oligomeric Death Domain Complex
authors	H.H.Park, E.Logette, S.Raunser, S.Cuenin, T.Walz, J.Tschopp, H.Wu
compound		source
Molecule: Death Domain-Containing Protein Cradd Chain: A, B, C, D, E, F, G Synonym: Caspase And Rip Adapter With Death Domain, Rip-Ass Protein With A Death Domain; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cradd, Raidd Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet26b
Molecule: Leucine-Rich Repeat And Death Domain-Containing P Chain: H, I, J, K, L Synonym: P53-Induced Protein With A Death Domain Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Lrdd, Pidd Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet26b
symmetry	Space Group: P 65	R_factor 0.236 R_Free 0.275
crystal cell	length a length b length c angle alpha angle beta angle gamma 138.400 138.400 207.500 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.20 Å
Gene Ontology	Chain Function Process Component F, A, E, B, C, D, G J, K, H, I, L
Primary reference	Death domain assembly mechanism revealed by crystal structure of the oligomeric PIDDosome core complex., Park HH, Logette E, Raunser S, Cuenin S, Walz T, Tschopp J, Wu H, Cell. 2007 Feb 9;128(3):533-46. PMID:17289572

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (187 Kb) [Save to disk] Biological Unit Coordinates (2of5.pdb1.gz) 180 Kb CSU: Contacts of Structural Units for 2OF5 Likely Quarternary Molecular Structure file(s) for 2OF5 Structure Factors (482 Kb) Retrieve 2OF5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2OF5 from S2C, [Save to disk] Re-refined 2of5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OF5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2OF5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2OF5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2of5_J] [2of5_A] [2of5_H] [2of5_K] [2of5_G] [2of5_F] [2of5_D] [2of5_B] [2of5_C] [2of5] [2of5_I] [2of5_E] [2of5_L] SWISS-PROT database: [P78560] [Q9HB75] Domain organization of [CRADD_HUMAN] [PIDD_HUMAN] by SWISSPFAM Domain found in 2OF5: [DEATH ] by SMART

Other resources with information on 2OF5

Community annotation for 2OF5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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