2OFN Isomerase date Jan 04, 2007
title Solution Structure Of Fk506-Binding Domain (Fkbd)Of Fkbp35 F Plasmodium Falciparum
authors C.B.Kang, H.Ye, H.R.Yoon, H.S.Yoon
compound source
Molecule: 70 Kda Peptidylprolyl Isomerase, Putative
Chain: A
Fragment: Fk-506 Binding Domain
Synonym: Fkbp35, Fk506-Binding Protein 35
Ec: 5.2.1.8
Engineered: Yes
 Organism_scientific: Plasmodium Falciparum
Organism_taxid: 36329
Strain: 3d7
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet29
methodSolution NMR
ligand
enzyme Isomerase E.C.5.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of FK506 binding domain (FKBD) of Plasmodium falciparum FK506 binding protein 35 (PfFKBP35)., Kang CB, Ye H, Yoon HR, Yoon HS, Proteins. 2007 Sep 17;70(1):300-302. PMID:17876830
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (789 Kb) [Save to disk]
  • Biological Unit Coordinates (2ofn.pdb1.gz) 40 Kb
  • CSU: Contacts of Structural Units for 2OFN
  • Original NMR restraints for 2OFN from PDB
  • Retrieve 2OFN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OFN from S2C, [Save to disk]
    • View 2OFN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2OFN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OFN, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ofn] [2ofn_A]
  • SWISS-PROT database: [Q8I4V8]
  • Domain organization of [Q8I4V8_PLAF7] by SWISSPFAM
    • Other resources with information on 2OFN
  • Community annotation for 2OFN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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