2ORB	Immune System	date	Feb 02, 2007
title	The Structure Of The Anti-C-Myc Antibody 9e10 Fab Fragment
authors	N.Krauss, P.Scheerer, W.Hoehne
compound		source
Molecule: Monoclonal Anti-C-Myc Antibody 9e10 Chain: L, M Fragment: Light Chain Of Antigen Binding Fragment, Fab		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Strain: Balbc
Molecule: Monoclonal Anti-C-Myc Antibody 9e10 Chain: H, I Fragment: Heavy Chain Of Antigen Binding Fragment, Fab		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Strain: Balbc
symmetry	Space Group: P 1 21 1	R_factor 0.261 R_Free 0.317
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.593 65.462 117.689 90.00 96.97 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	SO4	enzyme
Primary reference	The structure of the anti-c-myc antibody 9E10 Fab fragment/epitope peptide complex reveals a novel binding mode dominated by the heavy chain hypervariable loops., Krauss N, Wessner H, Welfle K, Welfle H, Scholz C, Seifert M, Zubow K, Ay J, Hahn M, Scheerer P, Skerra A, Hohne W, Proteins. 2008 Nov 15;73(3):552-65. PMID:18473392

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk] Biological Unit Coordinates (2orb.pdb1.gz) 69 Kb Biological Unit Coordinates (2orb.pdb2.gz) 69 Kb LPC: Ligand-Protein Contacts for 2ORB CSU: Contacts of Structural Units for 2ORB Likely Quarternary Molecular Structure file(s) for 2ORB Structure Factors (283 Kb) Retrieve 2ORB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ORB from S2C, [Save to disk] Re-refined 2orb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2ORB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2ORB

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2ORB, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2orb_H] [2orb_L] [2orb_M] [2orb] [2orb_I] SWISS-PROT database: [P01654] Domain organization of [KV3A1_MOUSE] by SWISSPFAM Domains found in 2ORB: [IG_like] [IGv ] by SMART

Other resources with information on 2ORB

Community annotation for 2ORB at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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