2OVO Proteinase Inhibitor (Kazal) date Jun 11, 1985
title The Crystal And Molecular Structure Of The Third Domain Of S Pheasant Ovomucoid (Omsvp3)
authors W.Bode, O.Epp
compound source
Molecule: Ovomucoid Third Domain
Chain: A
Engineered: Yes
 Organism_scientific: Lophura Nycthemera
Organism_common: Silver Pheasant
Organism_taxid: 9046
symmetry Space Group: C 1 2 1
R_factor 0.199 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.290 21.150 44.050 90.00 107.00 90.00
method X-Ray Diffractionresolution 1.50 Å
related structures by homologous chain: 1SGP, 1YU6
Gene
Ontology
ChainFunctionProcessComponent
A
  • serine-type endopeptidase in...


    • Primary referenceThe crystal and molecular structure of the third domain of silver pheasant ovomucoid (OMSVP3)., Bode W, Epp O, Huber R, Laskowski M Jr, Ardelt W, Eur J Biochem 1985 Mar 1;147(2):387-95. PMID:3971987
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (2ovo.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 2OVO
  • Likely Quarternary Molecular Structure file(s) for 2OVO
  • Structure Factors (75 Kb)
  • Retrieve 2OVO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OVO from S2C, [Save to disk]
  • Re-refined 2ovo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2OVO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2OVO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 2OVO from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OVO, from MSDmotif at EBI
  • Genome occurence of 2OVO's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2ovo__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ovo] [2ovo_A]
  • SWISS-PROT database: [P67954]
  • Domain organization of [IOVO_LOPNY] by SWISSPFAM
  • Domain found in 2OVO: [KAZAL ] by SMART
    • Other resources with information on 2OVO
  • Community annotation for 2OVO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 2OVO from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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