2OXU	Hydrolase	date	Feb 21, 2007
title	Uninhibited Form Of Human Mmp-12
authors	V.Calderone, I.Bertini, M.Fragai, C.Luchinat, M.Maletta, K.J.Yeo
compound		source
Molecule: Macrophage Metalloelastase Chain: A Fragment: Catalytic Domain Synonym: Hme, Matrix Metalloproteinase-12, Mmp-12, Macropha Elastase, Me; Ec: 3.4.24.65 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mmp12, Hme Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21de3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21
symmetry	Space Group: C 1 2 1	R_factor 0.197 R_Free 0.216
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.545 60.751 54.264 90.00 115.64 90.00
method	X-Ray Diffraction	resolution	1.24 Å
ligand	CA, ZN	enzyme	Hydrolase E.C.3.4.24.65 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Snapshots of the reaction mechanism of matrix metalloproteinases., Bertini I, Calderone V, Fragai M, Luchinat C, Maletta M, Yeo KJ, Angew Chem Int Ed Engl. 2006 Dec 4;45(47):7952-5. PMID:17096442

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk] Biological Unit Coordinates (2oxu.pdb1.gz) 57 Kb LPC: Ligand-Protein Contacts for 2OXU CSU: Contacts of Structural Units for 2OXU Likely Quarternary Molecular Structure file(s) for 2OXU Structure Factors (2011 Kb) Retrieve 2OXU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2OXU from S2C, [Save to disk] Re-refined 2oxu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OXU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2OXU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2OXU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2oxu_A] [2oxu] SWISS-PROT database: [P39900] Domain organization of [MMP12_HUMAN] by SWISSPFAM Domain found in 2OXU: [ZnMc ] by SMART

Other resources with information on 2OXU

Community annotation for 2OXU at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---