2OYE Oxidoreductase date Feb 21, 2007
title Indomethacin-(R)-Alpha-Ethyl-Ethanolamide Bound To Cyclooxyg
authors C.A.Harman, R.M.Garavito
compound source
Molecule: Prostaglandin Gh Synthase 1
Chain: P
Synonym: Cyclooxygenase- 1, Cox-1, Prostaglandin-Endoperoxi Synthase 1, Prostaglandin H2 Synthase 1, Pgh Synthase 1, Pg 1;
Ec: 1.14.99.1
 Organism_scientific: Ovis Aries
Organism_common: Sheep
Organism_taxid: 9940
Other_details: Sheep Vesicular Gland
symmetry Space Group: P 65 2 2
R_factor 0.245 R_Free 0.292
crystal
cell
length a length b length c angle alpha angle beta angle gamma
181.720 181.720 104.090 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.85 Å
ligand BMA, BOG, FLC, HEM, IM8, NAG, NDG BindingDB enzyme Oxidoreductase E.C.1.14.99.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
P


Primary referenceStructural basis of enantioselective inhibition of cyclooxygenase-1 by S-alpha-substituted indomethacin ethanolamides., Harman CA, Turman MV, Kozak KR, Marnett LJ, Smith WL, Garavito RM, J Biol Chem. 2007 Sep 21;282(38):28096-105. Epub 2007 Jul 26. PMID:17656360
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (2oye.pdb1.gz) 169 Kb
  • LPC: Ligand-Protein Contacts for 2OYE
  • CSU: Contacts of Structural Units for 2OYE
  • Likely Quarternary Molecular Structure file(s) for 2OYE
  • Structure Factors (197 Kb)
  • Retrieve 2OYE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OYE from S2C, [Save to disk]
  • Re-refined 2oye structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2OYE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2OYE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OYE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2oye] [2oye_P]
  • SWISS-PROT database: [P05979]
  • Domain organization of [PGH1_SHEEP] by SWISSPFAM
  • Domain found in 2OYE: [EGF ] by SMART
    • Other resources with information on 2OYE
  • Community annotation for 2OYE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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