2P0G Structural Genomics, Unknown Function date Feb 28, 2007
title Crystal Structure Of Selenoprotein W-Related Protein From Vi Cholerae. Northeast Structural Genomics Target Vcr75
authors J.Benach, H.Neely, J.Seetharaman, C.K.Ho, H.Janjua, K.Cunningham, R.Xiao, J.Liu, M.C.Baran, T.B.Acton, B.Rost, G.T.Montelione, J.F. L.Tong, Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Selenoprotein W-Related Protein
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Vibrio Cholerae
Organism_taxid: 666
Strain: El Tor Inaba N16961
Atcc: 39315
Gene: Vc0982
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)+Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21
symmetry Space Group: P 31 2 1
R_factor 0.226 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.602 81.602 105.848 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (2p0g.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 2P0G
  • CSU: Contacts of Structural Units for 2P0G
  • Likely Quarternary Molecular Structure file(s) for 2P0G
  • Structure Factors (774 Kb)
  • Retrieve 2P0G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2P0G from S2C, [Save to disk]
  • Re-refined 2p0g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2P0G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2P0G
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2P0G, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2p0g_C] [2p0g_B] [2p0g] [2p0g_D] [2p0g_A]
  • SWISS-PROT database: [Q9KTC1]
  • Domain organization of [Q9KTC1_VIBCH] by SWISSPFAM
    • Other resources with information on 2P0G
  • Community annotation for 2P0G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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