2P0T Structural Genomics, Unknown Function date Mar 01, 2007
title Structural Genomics, The Crystal Structure Of A Conserved Pu Protein From Pseudomonas Syringae Pv. Tomato Str. Dc3000
authors K.Tan, L.Bigelow, S.Clancy, A.Joachimiak, Midwest Center For Str Genomics (Mcsg)
compound source
Molecule: Upf0307 Protein Pspto_4464
Chain: A
Engineered: Yes
 Organism_scientific: Pseudomonas Syringae Pv. Tomato
Organism_taxid: 223283
Strain: Dc3000
Gene: Pspto_4464
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg19
symmetry Space Group: P 31 2 1
R_factor 0.216 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.848 47.848 127.822 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.19 Å
ligand FMT, MSE, PEG enzyme
Gene PSPTO
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (2p0t.pdb1.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 2P0T
  • CSU: Contacts of Structural Units for 2P0T
  • Likely Quarternary Molecular Structure file(s) for 2P0T
  • Structure Factors (128 Kb)
  • Retrieve 2P0T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2P0T from S2C, [Save to disk]
  • Re-refined 2p0t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2P0T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2P0T
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2P0T, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2p0t_A] [2p0t]
  • SWISS-PROT database: [Q87WS9]
  • Domain organization of [Y4464_PSESM] by SWISSPFAM
    • Other resources with information on 2P0T
  • Community annotation for 2P0T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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