2P12 Structural Genomics, Unknown Function date Mar 01, 2007
title Crystal Structure Of Protein Of Unknown Function Duf402 From Rhodococcus Sp. Rha1
authors Y.Kim, E.Evdokimova, M.Kudritska, A.Edwards, A.Savchenko, A.Joach Midwest Center For Structural Genomics (Mcsg)
compound source
Molecule: Hypothetical Protein Duf402
Chain: A, B
Engineered: Yes
 Organism_scientific: Rhodococcus Sp.
Organism_taxid: 101510
Strain: Rha1
Gene: Rha1_ro00977
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: C 1 2 1
R_factor 0.171 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
132.203 38.980 70.721 90.00 107.69 90.00
method X-Ray Diffractionresolution 1.63 Å
ligand ACY, GOL, MSE enzyme
Gene RHA1
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (2p12.pdb1.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 2P12
  • CSU: Contacts of Structural Units for 2P12
  • Likely Quarternary Molecular Structure file(s) for 2P12
  • Structure Factors (830 Kb)
  • Retrieve 2P12 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2P12 from S2C, [Save to disk]
  • Re-refined 2p12 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2P12 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2P12
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2P12, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2p12] [2p12_B] [2p12_A]
  • SWISS-PROT database: [Q0SI31]
  • Domain organization of [Q0SI31_RHOSR] by SWISSPFAM
    • Other resources with information on 2P12
  • Community annotation for 2P12 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science