OCA Atlas for 2P16

2P16

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CA, GG2 BindingDB

enzyme

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Discovery of 1-(4-Methoxyphenyl)-7-oxo-6-(4-(2-oxopiperidin-1-yl)phenyl)-4,5,6,7-tetrah ydro- 1H-pyrazolo[3,4-c]pyridine-3-carboxamide (Apixaban, BMS-562247), a Highly Potent, Selective, Efficacious, and Orally Bioavailable Inhibitor of Blood Coagulation Factor Xa., Pinto DJ, Orwat MJ, Koch S, Rossi KA, Alexander RS, Smallwood A, Wong PC, Rendina AR, Luettgen JM, Knabb RM, He K, Xin B, Wexler RR, Lam PY, J Med Chem. 2007 Oct 3;. PMID:17914785

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]

Biological Unit Coordinates (2p16.pdb1.gz) 49 Kb

LPC: Ligand-Protein Contacts for 2P16

CSU: Contacts of Structural Units for 2P16

Likely Quarternary Molecular Structure file(s) for 2P16

Structure Factors (212 Kb)

Retrieve 2P16 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2P16 from S2C, [Save to disk]

Re-refined 2p16 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2P16 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2p16] [2p16_A] [2p16_L]

SWISS-PROT database: [P00742]

Domains found in 2P16: [EGF] [Tryp_SPc ] by SMART

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