2P18 Hydrolase date Mar 02, 2007
title Crystal Structure Of The Leishmania Infantum Glyoxalase II
authors J.Trincao, L.Barata, S.Najmudin, C.Bonifacio, M.J.Romao
compound source
Molecule: Glyoxalase II
Chain: A
Ec: 3.1.2.6
Engineered: Yes
Organism_scientific: Leishmania Infantum
Organism_taxid: 5671
Gene: Glo2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Codon Plus
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: C 2 2 21
R_factor 0.171 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.705 88.989 85.864 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ACY, SPD, ZN enzyme Hydrolase E.C.3.1.2.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCatalysis and Structural Properties of Leishmania infantum Glyoxalase II: Trypanothione Specificity and Phylogeny(,)., Silva MS, Barata L, Ferreira AE, Romao S, Tomas AM, Freire AP, Cordeiro C, Biochemistry. 2008 Jan 8;47(1):195-204. Epub 2007 Dec 6. PMID:18052346
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (2p18.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 2P18
  • CSU: Contacts of Structural Units for 2P18
  • Likely Quarternary Molecular Structure file(s) for 2P18
  • Structure Factors (189 Kb)
  • Retrieve 2P18 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2P18 from S2C, [Save to disk]
  • Re-refined 2p18 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2P18 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2P18
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2P18, from MSDmotif at EBI
  • Fold representative 2p18 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2p18] [2p18_A]
  • SWISS-PROT database: [Q2PYN0]
  • Domain organization of [Q2PYN0_LEIIN] by SWISSPFAM
  • Domain found in 2P18: [Lactamase_B ] by SMART
  • Other resources with information on 2P18
  • Community annotation for 2P18 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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