2P1Z Transferase date Mar 06, 2007
title Crystal Structure Of Phosphoribosyltransferase From Coryneba Diphtheriae
authors C.Chang, H.Li, S.Clancy, A.Joachimiak, Midwest Center For Struct Genomics (Mcsg)
compound source
Molecule: Phosphoribosyltransferase
Chain: A, B
Ec: 2.4.2.10
Engineered: Yes
Organism_scientific: Corynebacterium Diphtheriae
Organism_taxid: 257309
Strain: Nctc 13129
Atcc: 700971
Gene: Pyre, Dip2097
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Derivative
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg
symmetry Space Group: P 21 21 2
R_factor 0.226 R_Free 0.308
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.438 103.709 39.417 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.44 Å
ligand MSE enzyme Transferase E.C.2.4.2.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (2p1z.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 2P1Z
  • CSU: Contacts of Structural Units for 2P1Z
  • Likely Quarternary Molecular Structure file(s) for 2P1Z
  • Structure Factors (167 Kb)
  • Retrieve 2P1Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2P1Z from S2C, [Save to disk]
  • Re-refined 2p1z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2P1Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2P1Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2P1Z, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2p1z_A] [2p1z] [2p1z_B]
  • SWISS-PROT database: [Q8NM11] [Q6NF12]
  • Domain organization of [PYRE_CORGL] [Q6NF12_CORDI] by SWISSPFAM
  • Other resources with information on 2P1Z
  • Community annotation for 2P1Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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