2P2T Transport Protein date Mar 07, 2007
title Crystal Structure Of Dynein Light Chain Lc8 Bound To Residue Of Intermediate Chain Ic74
authors G.Benison, P.A.Karplus, E.Barbar
compound source
Molecule: Dynein Light Chain 1, Cytoplasmic
Chain: A
Synonym: 8 Kda Dynein Light Chain, Cut Up Protein
Engineered: Yes
 Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
Gene: Ctp, Cdlc1, Ddlc1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dynein Intermediate Chain Peptide
Chain: C
Synonym: Dh Ic, Cytoplasmic Dynein Intermediate Chain, Prot Wing;
Engineered: Yes
Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. The Of The Peptide Can Be Naturally Found In Drosophila Melanog (Fruit Fly).
symmetry Space Group: P 61 2 2
R_factor 0.210 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.356 44.356 204.466 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
ligand ACT, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and dynamics of LC8 complexes with KXTQT-motif peptides: swallow and dynein intermediate chain compete for a common site., Benison G, Karplus PA, Barbar E, J Mol Biol. 2007 Aug 10;371(2):457-68. Epub 2007 May 24. PMID:17570393
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (2p2t.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 2P2T
  • CSU: Contacts of Structural Units for 2P2T
  • Likely Quarternary Molecular Structure file(s) for 2P2T
  • Structure Factors (41 Kb)
  • Retrieve 2P2T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2P2T from S2C, [Save to disk]
  • Re-refined 2p2t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2P2T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2P2T
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2P2T, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2p2t_C] [2p2t_A] [2p2t]
  • SWISS-PROT database: [Q24246] [Q24117]
  • Domain organization of [DYIN_DROME] [DYL1_DROME] by SWISSPFAM
  • Domain found in 2P2T: [Dynein_light ] by SMART
    • Other resources with information on 2P2T
  • Community annotation for 2P2T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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