2P4K	Oxidoreductase	date	Mar 12, 2007
title	Contribution To Structure And Catalysis Of Tyrosine 34 In Hu Manganese Superoxide Dismutase
authors	J.J.Perry
compound		source
Molecule: Superoxide Dismutase Chain: A, B, C, D Ec: 1.15.1.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sod2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Qc774i (Sod --) Expression_system_vector_type: Plasmid Expression_system_plasmid: Ptrc99a
symmetry	Space Group: P 21 21 21	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.559 77.798 136.097 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.48 Å
ligand	MN	enzyme	Oxidoreductase E.C.1.15.1.1 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Contribution of Human Manganese Superoxide Dismutase Tyrosine 34 to Structure and Catalysis (dagger)., Perry JJ, Hearn AS, Cabelli DE, Nick HS, Tainer JA, Silverman DN, Biochemistry. 2009 Mar 27. PMID:19265433

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (278 Kb) [Save to disk] Biological Unit Coordinates (2p4k.pdb1.gz) 273 Kb LPC: Ligand-Protein Contacts for 2P4K CSU: Contacts of Structural Units for 2P4K Likely Quarternary Molecular Structure file(s) for 2P4K Structure Factors (1175 Kb) Retrieve 2P4K in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2P4K from S2C, [Save to disk] Re-refined 2p4k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2P4K in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2P4K

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2P4K, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2p4k_C] [2p4k_B] [2p4k_D] [2p4k_A] [2p4k] SWISS-PROT database: [P04179] Domain organization of [SODM_HUMAN] by SWISSPFAM

Other resources with information on 2P4K

Community annotation for 2P4K at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---