2P5B date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand FE2, M3L, OGA, OXY, ZN BindingDB enzyme
Primary referenceStructural basis of the recognition of a methylated histone tail by JMJD2A., Chen Z, Zang J, Kappler J, Hong X, Crawford F, Wang Q, Lan F, Jiang C, Whetstine J, Dai S, Hansen K, Shi Y, Zhang G, Proc Natl Acad Sci U S A. 2007 Jun 26;104(26):10818-23. Epub 2007 Jun 13. PMID:17567753
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk]
  • Biological Unit Coordinates (2p5b.pdb1.gz) 63 Kb
  • Biological Unit Coordinates (2p5b.pdb2.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 2P5B
  • CSU: Contacts of Structural Units for 2P5B
  • Likely Quarternary Molecular Structure file(s) for 2P5B
  • Structure Factors (593 Kb)
  • Retrieve 2P5B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2P5B from S2C, [Save to disk]
  • Re-refined 2p5b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2P5B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2p5b] [2p5b_A] [2p5b_B] [2p5b_I] [2p5b_J]
  • SWISS-PROT database: [P84239] [O75164]
  • Domains found in 2P5B: [JmjC] [JmjN ] by SMART

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