2P6H Structural Genomics, Unknown Function date Mar 18, 2007
title Crystal Structure Of Hypothetical Protein Ape1520 From Aerop Pernix K1
authors H.Yamamoto, N.Kunishima, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Hypothetical Protein
Chain: A, B
Fragment: Unp Residues 4-136
Engineered: Yes
 Organism_scientific: Aeropyrum Pernix
Organism_taxid: 56636
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus(De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
symmetry Space Group: P 3
R_factor 0.192 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.023 73.023 49.433 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.95 Å
ligand SO4 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (2p6h.pdb1.gz) 69 Kb
  • Biological Unit Coordinates (2p6h.pdb2.gz) 24 Kb
  • Biological Unit Coordinates (2p6h.pdb3.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 2P6H
  • CSU: Contacts of Structural Units for 2P6H
  • Likely Quarternary Molecular Structure file(s) for 2P6H
  • Structure Factors (150 Kb)
  • Retrieve 2P6H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2P6H from S2C, [Save to disk]
  • Re-refined 2p6h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2P6H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2P6H
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2P6H, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2p6h_B] [2p6h_A] [2p6h]
  • SWISS-PROT database: [Q9YBS9]
  • Domain organization of [Q9YBS9_AERPE] by SWISSPFAM
    • Other resources with information on 2P6H
  • Community annotation for 2P6H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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