2PD2 Structural Genomics, Unknown Function date Mar 31, 2007
title Crystal Structure Of (St0148) Conserved Hypothetical From Su Tokodaii Strain7
authors J.Jeyakanthan, S.P.Kanaujia, Z.A.Rafi, K.Sekar, Y.Agari, Riken St Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Hypothetical Protein St0148
Chain: A, B
Engineered: Yes
 Organism_scientific: Sulfolobus Tokodaii
Organism_taxid: 273063
Strain: 7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl-21 Condon Plus (De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
symmetry Space Group: I 21 3
R_factor 0.186 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.272 112.272 112.272 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.06 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (2pd2.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (2pd2.pdb2.gz) 55 Kb
  • CSU: Contacts of Structural Units for 2PD2
  • Likely Quarternary Molecular Structure file(s) for 2PD2
  • Structure Factors (186 Kb)
  • Retrieve 2PD2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PD2 from S2C, [Save to disk]
  • Re-refined 2pd2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2PD2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2PD2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PD2, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pd2_B] [2pd2_A] [2pd2]
  • SWISS-PROT database: [Q976P3]
  • Domain organization of [Q976P3_SULTO] by SWISSPFAM
    • Other resources with information on 2PD2
  • Community annotation for 2PD2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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