2PGI Isomerase date Oct 27, 1998
title The Crystal Structure Of Phosphoglucose Isomerase-An Enzyme Autocrine Motility Factor Activity In Tumor Cells
authors Y.J.Sun, C.C.Chou, W.S.Chen, M.Meng, C.D.Hsiao
compound source
Molecule: Phosphoglucose Isomerase
Chain: A
Synonym: Glucose-6-Phosphate Isomerase
Ec: 5.3.1.9
Engineered: Yes
Organism_scientific: Geobacillus Stearothermophilus
Organism_taxid: 1422
Gene: Pgib
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Df2145
Expression_system_plasmid: Pmmb67eh
symmetry Space Group: I 2 2 2
R_factor 0.185 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.100 93.730 171.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand
enzyme Isomerase E.C.5.3.1.9 BRENDA
note 2PGI (Molecule of the Month:pdb89)
related structures by homologous chain: 1C7Q, 1C7R
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe crystal structure of a multifunctional protein: phosphoglucose isomerase/autocrine motility factor/neuroleukin., Sun YJ, Chou CC, Chen WS, Wu RT, Meng M, Hsiao CD, Proc Natl Acad Sci U S A 1999 May 11;96(10):5412-7. PMID:10318897
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (2pgi.pdb1.gz) 144 Kb
  • Biological Unit Coordinates (2pgi.pdb2.gz) 288 Kb
  • CSU: Contacts of Structural Units for 2PGI
  • Likely Quarternary Molecular Structure file(s) for 2PGI
  • Retrieve 2PGI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PGI from S2C, [Save to disk]
  • View 2PGI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PGI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PGI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2pgi__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pgi_A] [2pgi]
  • SWISS-PROT database: [P13376]
  • Domain organization of [G6PIB_BACST] by SWISSPFAM
  • Other resources with information on 2PGI
  • Community annotation for 2PGI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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