| Data retrieval |
- Asymmetric unit, PDB entry:
[header only] [complete with coordinates] (26 Kb) [Save to disk]
 - Biological Unit Coordinates (2phy.pdb1.gz) 23 Kb
- LPC: Ligand-Protein Contacts for 2PHY
- CSU: Contacts of Structural Units for 2PHY
- Likely Quarternary Molecular Structure file(s) for 2PHY
- Retrieve 2PHY in mmCIF format [Save to disk]
- SEQRES to COORDINATES
correlation for 2PHY
from S2C,
[Save to disk]
|
| View 2PHY in 3D |
-
Proteopedia, because life has more than 2D.
- On Jmol, a nice Rasmol like molecule viewer.
This is good for easiest viewing of basic structure.
- On FirstGlance, an
excellent tool for a guided tour on the structure components, by
E. Martz.
|
| Visual 3D analysis of 2PHY |
- Cartoon
representation from PDB Cartoon
- Ramachandran
plot from PDBSum
|
| Structure-derived information |
- Conformational Epitope Prediction for 2PHY from the CEP Server.
- Dipole moment, from Dipole Server at Weizmann Institute
- Crystal Contacts, from CryCo at Weizmann Institute
- 3D motif for 2PHY,
from MSDmotif at EBI
- Genome occurence of
2PHY's fold
from GeneCensus
- Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d2phy__, region
[Jmol]
[rasmolscript]
[script source]
- Fold representative 2phy from FSSP and Dali (Families of Structurally Similar Proteins)
- Class (fold), Architecture (subfold), Topology, Homologous superfamily from
CATH
- Summaries and structural analyses of PDB data files from
PDBSum
- Identification of Protein Pockets & Cavities at
CASTp
|
| Sequence-derived information |
- View one-letter amino acid or nucleotide sequence for each chain: [2phy_A] [2phy]
- SWISS-PROT database: [P16113]
- Domain organization of [PYP_HALHA] by SWISSPFAM
- Domain found in 2PHY: [PAS
] by SMART
|
|
Other resources with information on 2PHY |
- Community annotation for 2PHY at PDBWiki (http://pdbwiki.org)
- MMDB (Entrez's Structure Database)
|
| Movements, Movies and Images |
- Domain movements in
2PHY from the Database of
Macromolecular Movements.
- Images
from IMB Jena Image Library
of Biological Macromolecules.
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