2PJQ Structural Genomics, Unknown Function date Apr 16, 2007
title Crystal Structure Of Q88u62_lacpl From Lactobacillus Plantar Northeast Structural Genomics Target Lpr71
authors J.Benach, M.Su, J.Seetharaman, F.Forouhar, C.X.Chen, K.Cunningham L.Owens, M.Baran, T.B.Acton, G.T.Montelione, L.Tong, J.F.Hunt, No Structural Genomics Consortium (Nesg)
compound source
Molecule: Uncharacterized Protein Lp_2664
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Lactobacillus Plantarum Wcfs1
Organism_taxid: 220668
Strain: Wcfs1, Ncimb 8826
Atcc: Baa-793
Gene: Lp_2664
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)+Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21
symmetry Space Group: P 21 21 2
R_factor 0.236 R_Free 0.307
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.928 167.442 63.769 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand MSE enzyme
Gene LP
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (2pjq.pdb1.gz) 68 Kb
  • Biological Unit Coordinates (2pjq.pdb2.gz) 67 Kb
  • Biological Unit Coordinates (2pjq.pdb3.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 2PJQ
  • CSU: Contacts of Structural Units for 2PJQ
  • Likely Quarternary Molecular Structure file(s) for 2PJQ
  • Structure Factors (1230 Kb)
  • Retrieve 2PJQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PJQ from S2C, [Save to disk]
  • Re-refined 2pjq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2PJQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2PJQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PJQ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pjq_B] [2pjq] [2pjq_C] [2pjq_D] [2pjq_A]
  • SWISS-PROT database: [Q88U62]
  • Domain organization of [Q88U62_LACPL] by SWISSPFAM
  • Domain found in 2PJQ: [HDc ] by SMART
    • Other resources with information on 2PJQ
  • Community annotation for 2PJQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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