OCA Atlas for 2PKR

2PKR

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

NDP, SO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
Q, R, A, M, P, O, I, C, B, L, D, H

Primary reference

Molecular mechanism of thioredoxin regulation in photosynthetic A2B2-glyceraldehyde-3-phosphate dehydrogenase., Fermani S, Sparla F, Falini G, Martelli PL, Casadio R, Pupillo P, Ripamonti A, Trost P, Proc Natl Acad Sci U S A. 2007 Jun 26;104(26):11109-14. Epub 2007 Jun 15. PMID:17573533

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (626 Kb) [Save to disk]

Biological Unit Coordinates (2pkr.pdb1.gz) 212 Kb

Biological Unit Coordinates (2pkr.pdb2.gz) 212 Kb

Biological Unit Coordinates (2pkr.pdb3.gz) 211 Kb

LPC: Ligand-Protein Contacts for 2PKR

CSU: Contacts of Structural Units for 2PKR

Likely Quarternary Molecular Structure file(s) for 2PKR

Structure Factors (1748 Kb)

Retrieve 2PKR in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2PKR from S2C, [Save to disk]

Re-refined 2pkr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2PKR in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2pkr] [2pkr_A] [2pkr_B] [2pkr_C] [2pkr_D] [2pkr_H] [2pkr_I] [2pkr_L] [2pkr_M] [2pkr_O] [2pkr_P] [2pkr_Q] [2pkr_R]

SWISS-PROT database: [P19866]

Domain found in 2PKR: [Gp_dh_N ] by SMART

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