2PKU Protein Binding date Apr 18, 2007
title Solution Structure Of Pick1 Pdz In Complex With The Carboxyl Peptide Of Glur2
authors L.Pan, H.Wu, C.Shen, Y.Shi, J.Xia, M.Zhang
compound source
Molecule: Prkca-Binding Protein
Chain: A
Fragment: Pdz Domain
Synonym: Protein Kinase C-Alpha-Binding Protein, Protein In With C Kinase 1;
Engineered: Yes
 Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Peptide (Glu)(Ser)(Val)(Lys)(Ile)
Chain: B
Engineered: Yes
Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized
methodSolution NMR
Primary referenceClustering and synaptic targeting of PICK1 requires direct interaction between the PDZ domain and lipid membranes., Pan L, Wu H, Shen C, Shi Y, Jin W, Xia J, Zhang M, EMBO J. 2007 Oct 31;26(21):4576-87. Epub 2007 Oct 4. PMID:17914463
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (465 Kb) [Save to disk]
  • Biological Unit Coordinates (2pku.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 2PKU
  • Original NMR restraints for 2PKU from PDB
  • Retrieve 2PKU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PKU from S2C, [Save to disk]
    • View 2PKU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2PKU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PKU, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pku_A] [2pku_B] [2pku]
  • SWISS-PROT database: [Q9EP80]
  • Domain organization of [PICK1_RAT] by SWISSPFAM
  • Domain found in 2PKU: [PDZ ] by SMART
    • Other resources with information on 2PKU
  • Community annotation for 2PKU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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