2PMD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	GDP, GNP, PPV	enzyme
Gene Ontology	Chain Function Process Component B, A translation elongation facto...
Primary reference	New Insights into the Interactions of the Translation Initiation Factor 2 from Archaea with Guanine Nucleotides and Initiator tRNA., Nikonov O, Stolboushkina E, Nikulin A, Hasenohrl D, Blasi U, Manstein DJ, Fedorov R, Garber M, Nikonov S, J Mol Biol. 2007 Oct 19;373(2):328-36. Epub 2007 Aug 2. PMID:17825838

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk] Biological Unit Coordinates (2pmd.pdb1.gz) 69 Kb Biological Unit Coordinates (2pmd.pdb2.gz) 69 Kb LPC: Ligand-Protein Contacts for 2PMD CSU: Contacts of Structural Units for 2PMD Likely Quarternary Molecular Structure file(s) for 2PMD Structure Factors (377 Kb) Retrieve 2PMD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2PMD from S2C, [Save to disk] Re-refined 2pmd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2PMD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2pmd] [2pmd_A] [2pmd_B] SWISS-PROT database: [Q980A5]

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