2PMW Hydrolase date Apr 23, 2007
title The Crystal Structure Of Proprotein Convertase Subtilisin Kexin Type 9 (Pcsk9)
authors D.E.Piper, W.G.Romanow, S.T.Thibault, N.P.C.Walker
compound source
Molecule: Proprotein Convertase Subtilisinkexin Type 9
Chain: A
Synonym: Proprotein Convertase Pc9, Subtilisinkexin-Like Protease Pc9, Neural Apoptosis-Regulated Convertase 1, Narc-1;
Ec: 3.4.21.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pcsk9, Narc1
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469
Expression_system_vector_type: Plasmid

Molecule: Proprotein Convertase Subtilisinkexin Type 9
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469
symmetry Space Group: P 21 21 21
R_factor 0.196 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.106 70.709 150.693 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand SO4 enzyme Hydrolase E.C.3.4.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceThe Crystal Structure of PCSK9: A Regulator of Plasma LDL-Cholesterol., Piper DE, Jackson S, Liu Q, Romanow WG, Shetterly S, Thibault ST, Shan B, Walker NP, Structure. 2007 May;15(5):545-52. PMID:17502100
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (2pmw.pdb1.gz) 93 Kb
  • LPC: Ligand-Protein Contacts for 2PMW
  • CSU: Contacts of Structural Units for 2PMW
  • Likely Quarternary Molecular Structure file(s) for 2PMW
  • Structure Factors (256 Kb)
  • Retrieve 2PMW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PMW from S2C, [Save to disk]
  • Re-refined 2pmw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PMW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PMW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2PMW, from MSDmotif at EBI
  • Fold representative 2pmw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pmw_B] [2pmw_A] [2pmw]
  • SWISS-PROT database: [Q8NBP7]
  • Domain organization of [PCSK9_HUMAN] by SWISSPFAM
  • Other resources with information on 2PMW
  • Community annotation for 2PMW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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