OCA Atlas for 2PTU

2PTU

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
C, B, A, D

Primary reference

Structure of natural killer receptor 2B4 bound to CD48 reveals basis for heterophilic recognition in signaling lymphocyte activation molecule family., Velikovsky CA, Deng L, Chlewicki LK, Fernandez MM, Kumar V, Mariuzza RA, Immunity. 2007 Oct;27(4):572-84. Epub 2007 Oct 18. PMID:17950006

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]

Biological Unit Coordinates (2ptu.pdb1.gz) 19 Kb

Biological Unit Coordinates (2ptu.pdb2.gz) 19 Kb

Biological Unit Coordinates (2ptu.pdb3.gz) 18 Kb

Biological Unit Coordinates (2ptu.pdb4.gz) 18 Kb

CSU: Contacts of Structural Units for 2PTU

Likely Quarternary Molecular Structure file(s) for 2PTU

Structure Factors (627 Kb)

Retrieve 2PTU in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2PTU from S2C, [Save to disk]

Re-refined 2ptu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2PTU in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ptu] [2ptu_A] [2ptu_B] [2ptu_C] [2ptu_D]

SWISS-PROT database: [Q07763]

Domain found in 2PTU: [IG ] by SMART

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