2PV7 Crystal structure of chorismate mutase / prephenate dehydrogenase (tyrA) (1574749) from Haemophilus influenzae RD at 2.00 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.194
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand MSE, NAD, TYR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe structure of Haemophilus influenzae prephenate dehydrogenase suggests unique features of bifunctional TyrA enzymes., Chiu HJ, Abdubek P, Astakhova T, Axelrod HL, Carlton D, Clayton T, Das D, Deller MC, Duan L, Feuerhelm J, Grant JC, Grzechnik A, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Marciano D, McMullan D, Miller MD, Morse AT, Nigoghossian E, Okach L, Reyes R, Tien HJ, Trame CB, van den Bedem H, Weekes D, Xu Q, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Oct 1;66(Pt, 10):1317-25. Epub 2010 Jul 31. PMID:20944228
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (2pv7.pdb1.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 2PV7
  • CSU: Contacts of Structural Units for 2PV7
  • Likely Quarternary Molecular Structure file(s) for 2PV7
  • Structure Factors (9752 Kb)
  • Retrieve 2PV7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PV7 from S2C, [Save to disk]
  • Re-refined 2pv7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PV7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PV7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PV7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pv7] [2pv7_B] [2pv7_A]
  • SWISS-PROT database: [P43902]
  • Domain organization of [TYRA_HAEIN] by SWISSPFAM
  • Other resources with information on 2PV7
  • Community annotation for 2PV7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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