2PVL Transferase date May 09, 2007
title Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]Triazine Der As Potent Inhibitors Of Protein Kinase Ck2
authors Z.Nie, C.Perretta, P.Erickson, S.Margosiak, R.Almassy, J.Lu, A.Ave K.M.Yager, S.Chu
compound source
Molecule: Casein Kinase II Subunit Alpha
Chain: A
Synonym: Ck II, Ck2-Alpha, Protein Kinase Ck2 Alpha
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Zea Mays
Organism_taxid: 4577
Gene: Ack2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28a
symmetry Space Group: C 1 2 1
R_factor 0.245 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
142.682 59.287 45.536 90.00 102.95 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CSO, P55 enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-based design, synthesis, and study of pyrazolo[1,5-a][1,3,5]triazine derivatives as potent inhibitors of protein kinase CK2., Nie Z, Perretta C, Erickson P, Margosiak S, Almassy R, Lu J, Averill A, Yager KM, Chu S, Bioorg Med Chem Lett. 2007 Aug 1;17(15):4191-5. Epub 2007 May 18. PMID:17540560
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (2pvl.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 2PVL
  • CSU: Contacts of Structural Units for 2PVL
  • Likely Quarternary Molecular Structure file(s) for 2PVL
  • Retrieve 2PVL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PVL from S2C, [Save to disk]
  • View 2PVL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PVL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PVL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pvl] [2pvl_A]
  • SWISS-PROT database: [P28523]
  • Domain organization of [CSK2A_MAIZE] by SWISSPFAM
  • Domain found in 2PVL: [S_TKc ] by SMART
  • Other resources with information on 2PVL
  • Community annotation for 2PVL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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