2PY5		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	EDO	enzyme
note	2PY5 is a representative structure
Gene Ontology	Chain Function Process Component A, B DNA-directed DNA polymerase ... nuclease activity exonuclease activity
Primary reference	Structures of phi29 DNA polymerase complexed with substrate: the mechanism of translocation in B-family polymerases., Berman AJ, Kamtekar S, Goodman JL, Lazaro JM, de Vega M, Blanco L, Salas M, Steitz TA, EMBO J. 2007 Jul 5;. PMID:17611604

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (229 Kb) [Save to disk] Biological Unit Coordinates (2py5.pdb1.gz) 117 Kb Biological Unit Coordinates (2py5.pdb2.gz) 109 Kb LPC: Ligand-Protein Contacts for 2PY5 CSU: Contacts of Structural Units for 2PY5 Likely Quarternary Molecular Structure file(s) for 2PY5 Structure Factors (2507 Kb) Retrieve 2PY5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2PY5 from S2C, [Save to disk] Re-refined 2py5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2PY5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2py5] [2py5_A] [2py5_B] [2py5_D] [2py5_E] [2py5_J] [2py5_L] [2py5_Y] SWISS-PROT database: [P03680] Domain found in 2PY5: [POLBc ] by SMART

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