2PYJ date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand DGT, DOC, EDO, MG, MN enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, A
  • DNA-directed DNA polymerase ...
  • nuclease activity
  • exonuclease activity


    • Primary referenceStructures of phi29 DNA polymerase complexed with substrate: the mechanism of translocation in B-family polymerases., Berman AJ, Kamtekar S, Goodman JL, Lazaro JM, de Vega M, Blanco L, Salas M, Steitz TA, EMBO J. 2007 Jul 5;. PMID:17611604
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (245 Kb) [Save to disk]
  • Biological Unit Coordinates (2pyj.pdb1.gz) 117 Kb
  • Biological Unit Coordinates (2pyj.pdb2.gz) 115 Kb
  • Biological Unit Coordinates (2pyj.pdb3.gz) 15 Kb
  • LPC: Ligand-Protein Contacts for 2PYJ
  • CSU: Contacts of Structural Units for 2PYJ
  • Likely Quarternary Molecular Structure file(s) for 2PYJ
  • Structure Factors (1505 Kb)
  • Retrieve 2PYJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PYJ from S2C, [Save to disk]
  • Re-refined 2pyj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2PYJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pyj] [2pyj_A] [2pyj_B] [2pyj_J] [2pyj_K] [2pyj_Q] [2pyj_R] [2pyj_X] [2pyj_Y]
  • SWISS-PROT database: [P03680]
  • Domain found in 2PYJ: [POLBc ] by SMART

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