2PZH Hydrolase date May 18, 2007
title Ybgc Thioesterase (Hp0496) From Helicobacter Pylori
authors A.Angelini, L.Cendron, S.Goncalves, G.Zanotti, L.Terradot
compound source
Molecule: Hypothetical Protein Hp_0496
Chain: A, C, D, B
Engineered: Yes
Organism_scientific: Helicobacter Pylori
Organism_taxid: 85962
Strain: 26695
Gene: Hp0496
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Star (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet151d-Topo
symmetry Space Group: P 21 21 21
R_factor 0.209 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.860 99.206 107.288 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural and enzymatic characterization of HP0496, a YbgC thioesterase from Helicobacter pylori., Angelini A, Cendron L, Goncalves S, Zanotti G, Terradot L, Proteins. 2008 Mar 12;72(4):1212-1221. PMID:18338382
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (2pzh.pdb1.gz) 93 Kb
  • CSU: Contacts of Structural Units for 2PZH
  • Likely Quarternary Molecular Structure file(s) for 2PZH
  • Structure Factors (2685 Kb)
  • Retrieve 2PZH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PZH from S2C, [Save to disk]
  • Re-refined 2pzh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PZH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PZH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PZH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pzh_D] [2pzh] [2pzh_C] [2pzh_B] [2pzh_A]
  • SWISS-PROT database: [P94842]
  • Domain organization of [Y496_HELPY] by SWISSPFAM
  • Other resources with information on 2PZH
  • Community annotation for 2PZH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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