2Q13	Protein Transport	date	May 23, 2007
title	Crystal Structure Of Bar-Ph Domain Of Appl1
authors	G.Zhu, X.C.Zhang
compound		source
Molecule: Dcc-Interacting Protein 13 Alpha Chain: A Fragment: Residues 5-385, Bar And Ph Domains Synonym: Dip13 Alpha, Adapter Protein Containing Ph Domain Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Appl1, Appl, Dip13a, Kiaa1428 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: P 21 21 2	R_factor 0.205 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 103.737 105.675 36.407 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.05 Å
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of the APPL1 BAR-PH domain and characterization of its interaction with Rab5., Zhu G, Chen J, Liu J, Brunzelle JS, Huang B, Wakeham N, Terzyan S, Li X, Rao Z, Li G, Zhang XC, EMBO J. 2007 Jul 25;26(14):3484-93. Epub 2007 Jun 21. PMID:17581628

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk] Biological Unit Coordinates (2q13.pdb1.gz) 125 Kb CSU: Contacts of Structural Units for 2Q13 Likely Quarternary Molecular Structure file(s) for 2Q13 Structure Factors (181 Kb) Retrieve 2Q13 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2Q13 from S2C, [Save to disk] Re-refined 2q13 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2Q13 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2Q13

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2Q13, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2q13] [2q13_A] SWISS-PROT database: [Q9UKG1] Domain organization of [DP13A_HUMAN] by SWISSPFAM Domain found in 2Q13: [PH ] by SMART

Other resources with information on 2Q13

Community annotation for 2Q13 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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