2Q15 Hydrolase date May 23, 2007
title Structure Of Bace Complexed To Compound 3a
authors A.J.Sharff
compound source
Molecule: Beta-Secretase 1
Chain: A
Synonym: Beta-Site App Cleaving Enzyme 1, Beta-Site Amyloid Cleaving Enzyme 1, Membrane-Associated Aspartic Protease 2, 2, Aspartyl Protease 2, Asp 2, Asp2;
Ec: 3.4.23.46
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bace1, Bace
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61 2 2
R_factor 0.252 R_Free 0.344
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.347 102.347 169.715 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand 3MR BindingDB enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary reference2-Amino-3,4-dihydroquinazolines as inhibitors of BACE-1 (beta-Site APP cleaving enzyme): Use of structure based design to convert a micromolar hit into a nanomolar lead., Baxter EW, Conway KA, Kennis L, Bischoff F, Mercken MH, Winter HL, Reynolds CH, Tounge BA, Luo C, Scott MK, Huang Y, Braeken M, Pieters SM, Berthelot DJ, Masure S, Bruinzeel WD, Jordan AD, Parker MH, Boyd RE, Qu J, Alexander RS, Brenneman DE, Reitz AB, J Med Chem. 2007 Sep 6;50(18):4261-4. Epub 2007 Aug 8. PMID:17685503
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (2q15.pdb1.gz) 128 Kb
  • LPC: Ligand-Protein Contacts for 2Q15
  • CSU: Contacts of Structural Units for 2Q15
  • Likely Quarternary Molecular Structure file(s) for 2Q15
  • Retrieve 2Q15 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Q15 from S2C, [Save to disk]
  • View 2Q15 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Q15
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Q15, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2q15_A] [2q15]
  • SWISS-PROT database: [P56817]
  • Belongs to the β-amyloid cleaving enzyme (bace1) family according to TCDB.
  • Domain organization of [BACE1_HUMAN] by SWISSPFAM
  • Other resources with information on 2Q15
  • Community annotation for 2Q15 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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