2Q4Q Structural Genomics, Unknown Function date May 31, 2007
title Ensemble Refinement Of The Protein Crystal Structure Of Gene From Homo Sapiens Hs.95870
authors E.J.Levin, D.A.Kondrashov, G.E.Wesenberg, G.N.Phillips Jr., Cent Eukaryotic Structural Genomics (Cesg)
compound source
Molecule: Upf0366 Protein C11orf67
Chain: A, B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: C11orf67, Ptd015, Hs.503357
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834 P(Rare2)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pvp16
symmetry Space Group: P 21 21 21
R_factor 0.173 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.912 57.731 89.195 90.00 90.00 90.00
method X-Ray Diffraction, 16 Modelsresolution 2.59 Å
ligand MSE enzyme
note 2Q4Q is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceEnsemble refinement of protein crystal structures: validation and application., Levin EJ, Kondrashov DA, Wesenberg GE, Phillips GN Jr, Structure. 2007 Sep;15(9):1040-52. PMID:17850744
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (589 Kb) [Save to disk]
  • Biological Unit Coordinates (2q4q.pdb1.gz) 21 Kb
  • Biological Unit Coordinates (2q4q.pdb2.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 2Q4Q
  • CSU: Contacts of Structural Units for 2Q4Q
  • Likely Quarternary Molecular Structure file(s) for 2Q4Q
  • Structure Factors (230 Kb)
  • Retrieve 2Q4Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Q4Q from S2C, [Save to disk]
  • View 2Q4Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Q4Q
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Q4Q, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2q4q_B] [2q4q_A] [2q4q]
  • SWISS-PROT database: [Q9H7C9]
  • Domain organization of [CK067_HUMAN] by SWISSPFAM
  • Other resources with information on 2Q4Q
  • Community annotation for 2Q4Q at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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