2Q8D date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand MLY, NI, SIN, ZN enzyme
Primary referenceSpecificity and mechanism of JMJD2A, a trimethyllysine-specific histone demethylase., Couture JF, Collazo E, Ortiz-Tello PA, Brunzelle JS, Trievel RC, Nat Struct Mol Biol. 2007 Aug;14(8):689-95. Epub 2007 Jun 24. PMID:17589523
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (2q8d.pdb1.gz) 60 Kb
  • Biological Unit Coordinates (2q8d.pdb2.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 2Q8D
  • CSU: Contacts of Structural Units for 2Q8D
  • Likely Quarternary Molecular Structure file(s) for 2Q8D
  • Structure Factors (534 Kb)
  • Retrieve 2Q8D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Q8D from S2C, [Save to disk]
  • Re-refined 2q8d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2Q8D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2q8d] [2q8d_A] [2q8d_B] [2q8d_F] [2q8d_G]
  • SWISS-PROT database: [O75164]
  • Domains found in 2Q8D: [JmjC] [JmjN ] by SMART

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