OCA Atlas for 2QAD

2QAD

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

EDO, MLA, NAG, TYS

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, E
B, F

Primary reference

Structures of the CCR5 N terminus and of a tyrosine-sulfated antibody with HIV-1 gp120 and CD4., Huang CC, Lam SN, Acharya P, Tang M, Xiang SH, Hussan SS, Stanfield RL, Robinson J, Sodroski J, Wilson IA, Wyatt R, Bewley CA, Kwong PD, Science. 2007 Sep 28;317(5846):1930-4. PMID:17901336

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (651 Kb) [Save to disk]

Biological Unit Coordinates (2qad.pdb1.gz) 325 Kb

Biological Unit Coordinates (2qad.pdb2.gz) 322 Kb

Biological Unit Coordinates (2qad.pdb3.gz) 641 Kb

LPC: Ligand-Protein Contacts for 2QAD

CSU: Contacts of Structural Units for 2QAD

Likely Quarternary Molecular Structure file(s) for 2QAD

Structure Factors (227 Kb)

Retrieve 2QAD in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2QAD from S2C, [Save to disk]

Re-refined 2qad structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2QAD in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2qad] [2qad_A] [2qad_B] [2qad_C] [2qad_D] [2qad_E] [2qad_F] [2qad_G] [2qad_H]

SWISS-PROT database: [P01730] [P35961] [P01857]

Domains found in 2QAD: [IG_like] [IGv ] by SMART

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