2QD9	Transferase	date	Jun 20, 2007
title	P38 Alpha Map Kinase Inhibitor Based On Heterobicyclic Scaff
authors	J.S.Sack
compound		source
Molecule: Mitogen-Activated Protein Kinase 14 Chain: A Synonym: Map Kinase P38 Alpha Ec: 2.7.11.24 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mapk14, Csbp, Csbp1, Csbp2, Cspb1, Mxi2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_cell_line: Bl21 De3 Expression_system_vector_type: Plasmid
symmetry	Space Group: P 21 21 21	R_factor 0.251 R_Free 0.282
crystal cell	length a length b length c angle alpha angle beta angle gamma 65.650 74.360 78.980 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	LGF	enzyme	Transferase E.C.2.7.11.24 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Synthesis and SAR of p38alpha MAP kinase inhibitors based on heterobicyclic scaffolds., Murali Dhar TG, Wrobleski ST, Lin S, Furch JA, Nirschl DS, Fan Y, Todderud G, Pitt S, Doweyko AM, Sack JS, Mathur A, McKinnon M, Barrish JC, Dodd JH, Schieven GL, Leftheris K, Bioorg Med Chem Lett. 2007 Jul 21;. PMID:17664068

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk] Biological Unit Coordinates (2qd9.pdb1.gz) 57 Kb LPC: Ligand-Protein Contacts for 2QD9 CSU: Contacts of Structural Units for 2QD9 Likely Quarternary Molecular Structure file(s) for 2QD9 Structure Factors (285 Kb) Retrieve 2QD9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2QD9 from S2C, [Save to disk] Re-refined 2qd9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2QD9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2QD9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2QD9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2qd9_A] [2qd9] SWISS-PROT database: [Q16539] Domain organization of [MK14_HUMAN] by SWISSPFAM Domain found in 2QD9: [S_TKc ] by SMART

Other resources with information on 2QD9

Community annotation for 2QD9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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