2QSV Structural Genomics, Unknown Function date Jul 31, 2007
title Crystal Structure Of Protein Of Unknown Function From Porphy Gingivalis W83
authors T.A.Binkowski, E.Duggan, M.Shui, A.Joachimiak, Midwest Center Fo Structural Genomics (Mcsg)
compound source
Molecule: Uncharacterized Protein
Chain: A
Fragment: C-Terminal Part: Residues 143-362
Engineered: Yes
 Organism_scientific: Porphyromonas Gingivalis
Organism_taxid: 242619
Strain: W83
Atcc: Baa-308
Gene: Pg_0320
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.204 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.237 107.237 59.833 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand MSE, NA, SO4 enzyme
Gene PG
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (2qsv.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 2QSV
  • CSU: Contacts of Structural Units for 2QSV
  • Likely Quarternary Molecular Structure file(s) for 2QSV
  • Structure Factors (173 Kb)
  • Retrieve 2QSV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2QSV from S2C, [Save to disk]
  • Re-refined 2qsv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2QSV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2QSV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2QSV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2qsv] [2qsv_A]
  • SWISS-PROT database: [Q7MX90]
  • Domain organization of [Q7MX90_PORGI] by SWISSPFAM
    • Other resources with information on 2QSV
  • Community annotation for 2QSV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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