2QU3 Hydrolase date Aug 03, 2007
title Bace1 With Compound 2
authors R.Chopra
compound source
Molecule: Beta-Secretase 1
Chain: A
Fragment: Extracellular Domain
Synonym: Beta-Site App Cleaving Enzyme 1, Beta-Site Amyloid Precursor Protein Cleaving Enzyme 1, Membrane- Associated Aspartic Protease 2, Memapsin-2, Aspartyl Protease 2, Asp 2, Asp2;
Ec: 3.4.23.46
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: Bace1, Bace
Expression_system: Escherichia Coli
symmetry Space Group: C 1 2 1
R_factor 0.235 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.088 103.844 50.023 90.00 95.29 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 462 BindingDB enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThiophene substituted acylguanidines as BACE1 inhibitors., Fobare WF, Solvibile WR, Robichaud AJ, Malamas MS, Manas E, Turner J, Hu Y, Wagner E, Chopra R, Cowling R, Jin G, Bard J, Bioorg Med Chem Lett. 2007 Oct 1;17(19):5353-6. Epub 2007 Aug 11. PMID:17761418
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (2qu3.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 2QU3
  • CSU: Contacts of Structural Units for 2QU3
  • Likely Quarternary Molecular Structure file(s) for 2QU3
  • Retrieve 2QU3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2QU3 from S2C, [Save to disk]
  • View 2QU3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2QU3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2QU3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2qu3] [2qu3_A]
  • SWISS-PROT database: [P56817]
  • Belongs to the β-amyloid cleaving enzyme (bace1) family according to TCDB.
  • Domain organization of [BACE1_HUMAN] by SWISSPFAM
  • Other resources with information on 2QU3
  • Community annotation for 2QU3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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