2QVY Ligase date Aug 09, 2007
title 4-Chlorobenzoyl-Coa Ligasesynthetase, I303g Mutation, Bound Dichlorobenzoate
authors R.Wu, A.S.Reger, J.Cao, A.M.Gulick, D.Dunaway-Mariano
compound source
Molecule: 4-Chlorobenzoate Coa Ligase
Chain: X
Ec: 6.2.1.33
Engineered: Yes
Organism_scientific: Alcaligenes Sp.
Organism_taxid: 206162
Strain: Al3007
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe-70
symmetry Space Group: P 32 2 1
R_factor 0.191 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
127.813 127.813 71.421 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.76 Å
ligand 34Z enzyme Ligase E.C.6.2.1.33 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
X


Primary referenceRational redesign of the 4-chlorobenzoate binding site of 4-chlorobenzoate: coenzyme a ligase for expanded substrate range(,)(,)., Wu R, Reger AS, Cao J, Gulick AM, Dunaway-Mariano D, Biochemistry. 2007 Dec 18;46(50):14487-99. Epub 2007 Nov 21. PMID:18027984
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (2qvy.pdb1.gz) 147 Kb
  • LPC: Ligand-Protein Contacts for 2QVY
  • CSU: Contacts of Structural Units for 2QVY
  • Likely Quarternary Molecular Structure file(s) for 2QVY
  • Structure Factors (248 Kb)
  • Retrieve 2QVY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2QVY from S2C, [Save to disk]
  • Re-refined 2qvy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2QVY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2QVY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2QVY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2qvy_X] [2qvy]
  • SWISS-PROT database: [Q8GN86]
  • Domain organization of [Q8GN86_9BURK] by SWISSPFAM
  • Other resources with information on 2QVY
  • Community annotation for 2QVY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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