2QZF Immune System date Aug 16, 2007
title Scr1 Of Daf From 1ojv Fitted Into Cryoem Density
authors S.Hafenstein, V.D.Bowman, P.R.Chipman, C.M.Bator Kelly, F.Lin, M. M.G.Rossmann
compound source
Molecule: Complement Decay-Accelerating Factor
Chain: A
Fragment: Scr1 Domain
Synonym: Cd55 Antigen
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 14.00 Å
note 2QZF is a representative structure
Primary referenceThe Interaction of Decay-accelerating Factor with Coxsackievirus B3., Hafenstein S, Bowman VD, Chipman PR, Kelly CM, Lin F, Medof DE, Rossmann MG, J Virol. 2007 Sep 5;. PMID:17804498
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (2qzf.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 2QZF
  • Likely Quarternary Molecular Structure file(s) for 2QZF
  • Retrieve 2QZF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2QZF from S2C, [Save to disk]
    • View 2QZF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2QZF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2QZF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2qzf_A] [2qzf]
  • SWISS-PROT database: [P08174]
  • Domain organization of [DAF_HUMAN] by SWISSPFAM
  • Domain found in 2QZF: [CCP ] by SMART
    • Other resources with information on 2QZF
  • Community annotation for 2QZF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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