2R17	Protein Transport	date	Aug 22, 2007
title	Functional Architecture Of The Retromer Cargo-Recognition Co
authors	A.Hierro, A.L.Rojas, R.Rojas, N.Murthy, G.Effantin, A.V.Kajava, A. J.S.Bonifacino, J.H.Hurley
compound		source
Molecule: Vacuolar Protein Sorting-Associated Protein 29 Chain: A, B Synonym: Vesicle Protein Sorting 29, Hvps29, Pep11 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Vps29 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
Molecule: Vacuolar Protein Sorting-Associated Protein 35 Chain: C, D Synonym: Vesicle Protein Sorting 35, Hvps35, Maternal-Embry Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Vps35, Mem3 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
symmetry	Space Group: P 21 21 21	R_factor 0.216 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 66.250 128.471 140.452 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	GOL, MSE	enzyme
Gene Ontology	Chain Function Process Component A, B D, C
Primary reference	Functional architecture of the retromer cargo-recognition complex., Hierro A, Rojas AL, Rojas R, Murthy N, Effantin G, Kajava AV, Steven AC, Bonifacino JS, Hurley JH, Nature. 2007 Oct 25;449(7165):1063-7. Epub 2007 Sep 23. PMID:17891154

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk] Biological Unit Coordinates (2r17.pdb1.gz) 81 Kb Biological Unit Coordinates (2r17.pdb2.gz) 78 Kb LPC: Ligand-Protein Contacts for 2R17 CSU: Contacts of Structural Units for 2R17 Likely Quarternary Molecular Structure file(s) for 2R17 Structure Factors (547 Kb) Retrieve 2R17 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2R17 from S2C, [Save to disk] Re-refined 2r17 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2R17 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2R17

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2R17, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2r17] [2r17_A] [2r17_D] [2r17_B] [2r17_C] SWISS-PROT database: [Q9UBQ0] [Q96QK1] Domain organization of [VPS29_HUMAN] [VPS35_HUMAN] by SWISSPFAM

Other resources with information on 2R17

Community annotation for 2R17 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---